Variant report

Variant	rs55689327
Chromosome Location	chr4:22671140-22671141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:22516555..22518423-chr4:22670641..22673303,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152990	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10005465	0.93[EUR][1000 genomes]
rs10012430	0.93[EUR][1000 genomes]
rs28495267	0.93[EUR][1000 genomes]
rs28561837	0.93[EUR][1000 genomes]
rs56221574	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56398718	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59785842	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61069572	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6820211	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841197	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73106153	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73106159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22663200-22674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:22669200-22671600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:22669200-22673800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:22669400-22672600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:22669800-22671800	Enhancers	Primary B cells from cord blood	blood
6	chr4:22670000-22671200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:22670200-22671400	Enhancers	Fetal Muscle Leg	muscle
8	chr4:22670200-22671400	Enhancers	HSMMtube	muscle
9	chr4:22670200-22674200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:22670400-22678600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr4:22670600-22671600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:22670600-22671800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr4:22670600-22672000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr4:22670600-22681800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:22670800-22671200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:22670800-22671200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:22670800-22672600	Weak transcription	Fetal Heart	heart
18	chr4:22670800-22672800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:22670800-22673800	Enhancers	Primary T cells from cord blood	blood
20	chr4:22670800-22673800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr4:22670800-22673800	Weak transcription	Fetal Thymus	thymus

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