Variant report

Variant	rs10006675
Chromosome Location	chr4:129658198-129658199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12506981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509070	0.93[EUR][1000 genomes]
rs12509131	0.93[EUR][1000 genomes]
rs12509198	0.93[EUR][1000 genomes]
rs12509201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13115151	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13128507	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1364968	0.82[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1425619	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1991237	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2391327	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28453786	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450950	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4975246	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57872653	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6811857	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7692380	0.83[CEU][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	esv3381067	chr4:129656202-129658250	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv1020801	chr4:129658178-129778086	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv537248	chr4:129658178-129778086	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129633000-129689600	Weak transcription	Right Atrium	heart
2	chr4:129647000-129658200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:129653800-129658200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:129654000-129658200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:129654000-129658400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:129654200-129658200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:129654600-129658400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:129654800-129658200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:129658000-129658600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:129658000-129659000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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