Variant report

Variant	rs10006711
Chromosome Location	chr4:75964760-75964761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10020755	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10049552	0.93[EUR][1000 genomes]
rs10049553	0.92[EUR][1000 genomes]
rs11098475	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11098644	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730113	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11944489	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2114176	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4859938	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6836018	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6836430	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75940000-75976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:75944200-75971000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:75951800-75965200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:75954400-75971000	Weak transcription	Fetal Heart	heart
5	chr4:75956400-75976000	Weak transcription	Spleen	Spleen
6	chr4:75956600-75964800	Weak transcription	Stomach Mucosa	stomach
7	chr4:75956800-75967600	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:75956800-75982800	Weak transcription	Pancreas	Pancrea
9	chr4:75957200-75976400	Weak transcription	Colonic Mucosa	Colon
10	chr4:75957600-75971200	Weak transcription	Fetal Intestine Small	intestine
11	chr4:75962000-75966000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:75962600-75966000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:75962600-75971000	Weak transcription	Right Atrium	heart
14	chr4:75962800-75971200	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:75962800-75975800	Weak transcription	Fetal Intestine Large	intestine
16	chr4:75963000-75964800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:75963000-75966200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:75963000-75967600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:75963000-75970400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:75963000-75971000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:75963000-75971000	Weak transcription	Aorta	Aorta
22	chr4:75963000-75971000	Weak transcription	GM12878-XiMat	blood
23	chr4:75963200-75976000	Weak transcription	Adipose Nuclei	Adipose
24	chr4:75963400-75971200	Weak transcription	Left Ventricle	heart

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