Variant report

Variant	rs11098644
Chromosome Location	chr4:75977301-75977302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10006711	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10020755	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10049552	0.85[EUR][1000 genomes]
rs10049553	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11098475	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11730113	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11944489	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2114176	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3775527	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs3822109	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4859938	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6836018	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6836430	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75956800-75982800	Weak transcription	Pancreas	Pancrea
2	chr4:75971800-75978600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:75971800-75979200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:75974000-75978400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:75974400-75982600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:75974800-75980000	Weak transcription	Aorta	Aorta
7	chr4:75974800-75983800	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:75975000-75978400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:75976200-75979600	Enhancers	Fetal Heart	heart
10	chr4:75976600-75977800	Enhancers	Right Ventricle	heart
11	chr4:75976600-75978000	Enhancers	Left Ventricle	heart
12	chr4:75976800-75978000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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