Variant report

Variant	rs2114176
Chromosome Location	chr4:75948868-75948869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10006711	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10020755	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10049552	0.98[EUR][1000 genomes]
rs10049553	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11098475	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11098644	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11730113	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11944489	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3775527	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3822109	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4859938	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6836018	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6836430	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75930400-75953000	Weak transcription	Right Atrium	heart
2	chr4:75938400-75952800	Weak transcription	Brain Anterior Caudate	brain
3	chr4:75938800-75962000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:75939000-75950400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:75939800-75952200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:75940000-75949800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:75940000-75976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:75940200-75953000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:75940400-75949200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:75941000-75959000	Weak transcription	Aorta	Aorta
11	chr4:75942000-75950000	Weak transcription	Pancreas	Pancrea
12	chr4:75942000-75956000	Weak transcription	Adipose Nuclei	Adipose
13	chr4:75942200-75949600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:75942600-75950000	Weak transcription	Right Ventricle	heart
15	chr4:75942800-75952800	Weak transcription	Left Ventricle	heart
16	chr4:75942800-75962200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:75944200-75956200	Weak transcription	Colonic Mucosa	Colon
18	chr4:75944200-75971000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:75944400-75952200	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:75945800-75955600	Weak transcription	GM12878-XiMat	blood
21	chr4:75946200-75949800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:75947400-75950800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:75948800-75950200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr4:75948800-75950600	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links