Variant report

Variant	rs10006983
Chromosome Location	chr4:148022698-148022699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10002243	0.85[EUR][1000 genomes]
rs10010037	0.85[EUR][1000 genomes]
rs10010117	0.85[EUR][1000 genomes]
rs10012343	0.85[EUR][1000 genomes]
rs10034616	0.85[EUR][1000 genomes]
rs17022628	0.93[EUR][1000 genomes]
rs28583237	0.85[EUR][1000 genomes]
rs56766792	0.81[EUR][1000 genomes]
rs72733798	0.85[EUR][1000 genomes]
rs72735715	0.85[EUR][1000 genomes]
rs72735721	0.84[EUR][1000 genomes]
rs7677110	0.85[EUR][1000 genomes]
rs7697358	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv16276	chr4:148020787-148022707	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148010000-148022800	Weak transcription	NHLF	lung
2	chr4:148017600-148023000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:148019000-148022800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:148020800-148024600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:148022600-148023400	Enhancers	Liver	Liver
6	chr4:148022600-148024200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:148022600-148024200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:148022600-148024400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:148022600-148024400	Enhancers	NHDF-Ad	bronchial
10	chr4:148022600-148024600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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