Variant report

Variant	rs17022628
Chromosome Location	chr4:148024488-148024489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10002243	0.93[EUR][1000 genomes]
rs10006983	0.93[EUR][1000 genomes]
rs10010037	0.93[EUR][1000 genomes]
rs10010117	0.93[EUR][1000 genomes]
rs10012343	0.93[EUR][1000 genomes]
rs10034616	0.93[EUR][1000 genomes]
rs10155125	0.86[EUR][1000 genomes]
rs55883521	0.86[EUR][1000 genomes]
rs72733798	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72735715	0.93[EUR][1000 genomes]
rs7677110	0.93[EUR][1000 genomes]
rs7697358	0.93[EUR][1000 genomes]
rs7698560	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148020800-148024600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:148022600-148024600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:148022800-148026400	Enhancers	NHLF	lung
4	chr4:148023000-148024600	Weak transcription	Ovary	ovary
5	chr4:148023200-148024600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:148023200-148024600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:148023800-148027600	Enhancers	Adipose Nuclei	Adipose
8	chr4:148024200-148024800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:148024200-148024800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr4:148024200-148025200	Enhancers	Fetal Lung	lung
11	chr4:148024400-148024800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:148024400-148024800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:148024400-148024800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:148024400-148024800	Enhancers	Brain Cingulate Gyrus	brain
15	chr4:148024400-148024800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:148024400-148024800	Flanking Active TSS	HSMM	muscle
17	chr4:148024400-148024800	Flanking Active TSS	HSMMtube	muscle
18	chr4:148024400-148024800	Flanking Active TSS	NH-A	brain
19	chr4:148024400-148024800	Flanking Active TSS	NHDF-Ad	bronchial
20	chr4:148024400-148024800	Flanking Active TSS	Osteobl	bone
21	chr4:148024400-148025000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:148024400-148025000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:148024400-148025000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:148024400-148025000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr4:148024400-148025000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:148024400-148025000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:148024400-148025000	Enhancers	Fetal Stomach	stomach
28	chr4:148024400-148025000	Enhancers	Left Ventricle	heart
29	chr4:148024400-148025000	Enhancers	Psoas Muscle	Psoas
30	chr4:148024400-148025200	Enhancers	Fetal Muscle Leg	muscle
31	chr4:148024400-148025200	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr4:148024400-148025400	Enhancers	Hela-S3	cervix
33	chr4:148024400-148025600	Enhancers	Fetal Heart	heart
34	chr4:148024400-148026200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr4:148024400-148026400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:148024400-148026400	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links