Variant report

Variant	rs10007809
Chromosome Location	chr4:110164922-110164923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110081460..110082993-chr4:110163181..110166012,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10030903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488876	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11932715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11934385	0.87[ASN][1000 genomes]
rs11939502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11943443	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11946089	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12640529	1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs12649586	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs17039896	0.87[AMR][1000 genomes]
rs17039914	1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs17040025	1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs17040052	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs17040077	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17040080	1.00[CEU][hapmap];0.87[ASN][1000 genomes]
rs17040084	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17040089	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17040091	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17040094	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17040097	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs2007788	0.87[ASN][1000 genomes]
rs2007789	0.87[ASN][1000 genomes]
rs2189705	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2526439	0.87[AMR][1000 genomes]
rs2526446	0.87[AMR][1000 genomes]
rs2526448	0.87[AMR][1000 genomes]
rs2704101	1.00[CEU][hapmap]
rs2704105	0.87[AMR][1000 genomes]
rs2704111	0.87[AMR][1000 genomes]
rs28503704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28698832	0.80[ASN][1000 genomes]
rs36050742	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41390947	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs41395650	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs56844951	0.87[ASN][1000 genomes]
rs56946607	0.87[ASN][1000 genomes]
rs56982165	0.87[ASN][1000 genomes]
rs57810497	0.87[ASN][1000 genomes]
rs58194956	0.82[ASN][1000 genomes]
rs58325010	0.87[ASN][1000 genomes]
rs58848856	0.87[ASN][1000 genomes]
rs61659244	0.87[ASN][1000 genomes]
rs6533415	0.87[AMR][1000 genomes]
rs6825027	0.87[ASN][1000 genomes]
rs6825515	0.87[ASN][1000 genomes]
rs6825986	0.87[ASN][1000 genomes]
rs6842851	0.87[ASN][1000 genomes]
rs6843241	0.87[ASN][1000 genomes]
rs6843308	0.87[ASN][1000 genomes]
rs6849377	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7656748	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7662008	0.87[ASN][1000 genomes]
rs7675810	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs7677934	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7681584	0.82[ASN][1000 genomes]
rs7692009	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7692026	0.87[ASN][1000 genomes]
rs7695378	0.92[ASW][hapmap]
rs9999518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110155200-110192200	Weak transcription	Hela-S3	cervix
2	chr4:110164800-110165200	Enhancers	HSMM	muscle
3	chr4:110164800-110165600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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