Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110097774..110100175-chr4:110104213..110106561,2	K562	blood:
2	chr4:110097805..110100910-chr4:110101192..110103918,4	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10007809	1.00[CEU][hapmap]
rs10030903	1.00[CEU][hapmap]
rs10033402	1.00[CEU][hapmap]
rs10488875	0.83[EUR][1000 genomes]
rs10488876	1.00[CEU][hapmap]
rs11932715	1.00[CEU][hapmap]
rs11939502	1.00[CEU][hapmap]
rs11943391	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11943443	1.00[CEU][hapmap]
rs11946089	1.00[CEU][hapmap]
rs17040077	1.00[CEU][hapmap]
rs17040080	1.00[CEU][hapmap]
rs17040084	1.00[CEU][hapmap]
rs17040089	1.00[CEU][hapmap]
rs17040091	1.00[CEU][hapmap]
rs17040094	1.00[CEU][hapmap]
rs17040097	1.00[CEU][hapmap]
rs2189705	1.00[CEU][hapmap]
rs2526453	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41390947	1.00[CEU][hapmap]
rs41395650	1.00[CEU][hapmap]
rs58194956	0.83[EUR][1000 genomes]
rs7656748	1.00[CEU][hapmap]
rs7675810	1.00[CEU][hapmap]
rs7686421	0.86[EUR][1000 genomes]
rs7692009	1.00[CEU][hapmap]
rs9999518	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110085000-110105600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:110093400-110105600	Weak transcription	Hela-S3	cervix
3	chr4:110098600-110100200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:110098800-110100200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:110098800-110100200	Weak transcription	K562	blood
6	chr4:110099000-110100200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:110099000-110100400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:110099000-110107000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:110099200-110100400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:110099200-110103400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:110099200-110104000	Weak transcription	Fetal Lung	lung
12	chr4:110099200-110104200	Weak transcription	Fetal Brain Male	brain
13	chr4:110099200-110107000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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