Variant report

Variant	rs10488875
Chromosome Location	chr4:110115229-110115230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10488876	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11932715	0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11934385	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11943443	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11946089	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12640529	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs12649586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17039896	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs17039914	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs17040025	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs17040052	1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040077	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17040080	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17040084	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17040089	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17040091	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17040094	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17040097	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2007788	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2007789	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2189705	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2526439	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs2526446	0.82[EUR][1000 genomes]
rs2526448	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2526453	0.83[EUR][1000 genomes]
rs2704101	0.83[EUR][1000 genomes]
rs2704105	0.91[EUR][1000 genomes]
rs2704111	0.85[EUR][1000 genomes]
rs28698832	0.93[ASN][1000 genomes]
rs41390947	1.00[CHB][hapmap]
rs41395650	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56844951	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56946607	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56982165	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57810497	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58194956	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58325010	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58601435	0.91[EUR][1000 genomes]
rs58848856	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61659244	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6533415	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs6825027	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6825515	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6825986	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6842851	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6843241	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6843308	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7656748	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7662008	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7675810	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7681584	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7692009	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7692026	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110106000-110127600	Weak transcription	HSMM	muscle
2	chr4:110107200-110126600	Weak transcription	Hela-S3	cervix

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