Variant report

Variant	rs58601435
Chromosome Location	chr4:110092348-110092349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10488875	0.91[EUR][1000 genomes]
rs10488876	0.89[AMR][1000 genomes]
rs11932715	0.89[AMR][1000 genomes]
rs11943443	0.89[AMR][1000 genomes]
rs11946089	0.89[AMR][1000 genomes]
rs12640529	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649586	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17039896	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17039914	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17040025	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040052	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040077	0.89[AMR][1000 genomes]
rs17040080	0.89[AMR][1000 genomes]
rs17040084	0.89[AMR][1000 genomes]
rs17040089	0.89[AMR][1000 genomes]
rs17040091	0.89[AMR][1000 genomes]
rs17040094	0.89[AMR][1000 genomes]
rs17040097	0.89[AMR][1000 genomes]
rs2007788	0.89[AMR][1000 genomes]
rs2007789	0.89[AMR][1000 genomes]
rs2189705	0.89[AMR][1000 genomes]
rs2526439	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526446	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526448	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704105	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704111	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35128275	0.84[ASN][1000 genomes]
rs41395650	0.89[AMR][1000 genomes]
rs56844951	0.89[AMR][1000 genomes]
rs56946607	0.89[AMR][1000 genomes]
rs56982165	0.89[AMR][1000 genomes]
rs57810497	0.89[AMR][1000 genomes]
rs58194956	0.91[EUR][1000 genomes]
rs58325010	0.89[AMR][1000 genomes]
rs58848856	0.89[AMR][1000 genomes]
rs61659244	0.89[AMR][1000 genomes]
rs6533415	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825027	0.89[AMR][1000 genomes]
rs6825515	0.89[AMR][1000 genomes]
rs6825986	0.89[AMR][1000 genomes]
rs6842851	0.89[AMR][1000 genomes]
rs6843241	0.89[AMR][1000 genomes]
rs6843308	0.89[AMR][1000 genomes]
rs7656748	0.89[AMR][1000 genomes]
rs7662008	0.89[AMR][1000 genomes]
rs7675810	0.89[AMR][1000 genomes]
rs7681584	0.89[AMR][1000 genomes]
rs7692009	0.89[AMR][1000 genomes]
rs7692026	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110085000-110105600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:110085400-110093800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110091600-110093400	Enhancers	Hela-S3	cervix
4	chr4:110091800-110093200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:110092000-110092400	Enhancers	NHDF-Ad	bronchial
6	chr4:110092200-110095200	Enhancers	K562	blood

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