Variant report

Variant	rs17040052
Chromosome Location	chr4:110101862-110101863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110092854..110099868-chr4:110101800..110110635,10	K562	blood:
2	chr4:110100446..110103419-chr4:110112253..110114136,2	K562	blood:
3	chr4:110097805..110100910-chr4:110101192..110103918,4	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10007809	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs10030903	1.00[CHB][hapmap]
rs10033402	0.87[AMR][1000 genomes]
rs10488875	1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488876	0.90[ASN][1000 genomes]
rs11932715	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs11934385	0.90[ASN][1000 genomes]
rs11939502	0.87[AMR][1000 genomes]
rs11943443	0.90[ASN][1000 genomes]
rs11946089	0.90[ASN][1000 genomes]
rs12640529	0.84[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12649586	0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17039896	0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17039914	0.84[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17040025	0.84[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040077	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17040080	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17040084	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17040089	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17040091	0.90[ASN][1000 genomes]
rs17040094	0.90[ASN][1000 genomes]
rs17040097	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2007788	0.90[ASN][1000 genomes]
rs2007789	0.90[ASN][1000 genomes]
rs2189705	0.90[ASN][1000 genomes]
rs2526439	0.85[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2526446	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2526448	1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2704105	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2704111	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28503704	0.87[AMR][1000 genomes]
rs28698832	0.93[ASN][1000 genomes]
rs36050742	0.87[AMR][1000 genomes]
rs41390947	1.00[CHB][hapmap]
rs41395650	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs56844951	0.90[ASN][1000 genomes]
rs56946607	0.90[ASN][1000 genomes]
rs56982165	0.90[ASN][1000 genomes]
rs57810497	0.90[ASN][1000 genomes]
rs58194956	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58325010	0.90[ASN][1000 genomes]
rs58601435	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58848856	0.90[ASN][1000 genomes]
rs61659244	0.90[ASN][1000 genomes]
rs6533415	0.86[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6825027	0.90[ASN][1000 genomes]
rs6825515	0.90[ASN][1000 genomes]
rs6825986	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6842851	0.90[ASN][1000 genomes]
rs6843241	0.90[ASN][1000 genomes]
rs6843308	0.90[ASN][1000 genomes]
rs6849377	0.87[AMR][1000 genomes]
rs7656748	0.90[ASN][1000 genomes]
rs7662008	0.90[ASN][1000 genomes]
rs7675810	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7677934	0.87[AMR][1000 genomes]
rs7681584	0.85[ASN][1000 genomes]
rs7692009	0.90[ASN][1000 genomes]
rs7692026	0.90[ASN][1000 genomes]
rs9999518	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110085000-110105600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:110093400-110105600	Weak transcription	Hela-S3	cervix
3	chr4:110099000-110107000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:110099200-110103400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:110099200-110104000	Weak transcription	Fetal Lung	lung
6	chr4:110099200-110104200	Weak transcription	Fetal Brain Male	brain
7	chr4:110099200-110107000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:110100600-110105200	Weak transcription	K562	blood
9	chr4:110101400-110103800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:110101400-110103800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:110101400-110104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:110101400-110105000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:110101600-110106800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:110101800-110102200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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