Variant report

Variant	rs10007838
Chromosome Location	chr4:6971141-6971142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6970235..6972134-chr4:6974556..6976234,2	K562	blood:
2	chr4:6969313..6971458-chr4:6985802..6989389,3	K562	blood:
3	chr4:6968058..6971311-chr4:6972075..6975359,5	K562	blood:
4	chr4:6970136..6972569-chr4:6974039..6977282,3	MCF-7	breast:
5	chr4:6918816..6920459-chr4:6968873..6971872,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10020561	1.00[AMR][1000 genomes]
rs10025944	1.00[AMR][1000 genomes]
rs10026013	1.00[AMR][1000 genomes]
rs13435398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435488	1.00[AMR][1000 genomes]
rs28412715	1.00[AMR][1000 genomes]
rs28461523	1.00[AMR][1000 genomes]
rs28463590	1.00[AMR][1000 genomes]
rs28546580	1.00[AMR][1000 genomes]
rs28620599	1.00[AMR][1000 genomes]
rs28629411	1.00[AMR][1000 genomes]
rs28631659	1.00[AMR][1000 genomes]
rs28757648	1.00[AMR][1000 genomes]
rs73086431	1.00[AMR][1000 genomes]
rs73088550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7666710	1.00[AMR][1000 genomes]
rs9291119	1.00[AMR][1000 genomes]
rs9994021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6955800-6976000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:6956000-6976000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:6957600-6973800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:6957600-6976000	Weak transcription	Fetal Lung	lung
5	chr4:6957800-6976000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:6958400-6975800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:6964200-6976000	Weak transcription	Brain Germinal Matrix	brain
8	chr4:6964800-6973400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:6965000-6976000	Weak transcription	A549	lung
10	chr4:6965200-6971600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:6965200-6973400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:6965200-6976000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:6965200-6976000	Weak transcription	Stomach Mucosa	stomach
14	chr4:6965200-6976200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:6965400-6973000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:6965400-6973000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:6965400-6973200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:6965400-6973400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:6965400-6973400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:6965400-6973600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:6965400-6974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:6965400-6976000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:6965400-6976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:6965400-6976000	Weak transcription	NHLF	lung
25	chr4:6965400-6976200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:6965400-6987800	Weak transcription	Small Intestine	intestine
27	chr4:6966200-6973800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr4:6966200-6976000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr4:6967000-6976000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr4:6967600-6973400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:6967600-6974400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr4:6967800-6973400	Weak transcription	Fetal Muscle Leg	muscle
33	chr4:6967800-6975000	Weak transcription	HSMMtube	muscle
34	chr4:6967800-6976000	Weak transcription	Fetal Kidney	kidney
35	chr4:6968000-6971600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr4:6968000-6973400	Weak transcription	Brain Angular Gyrus	brain
37	chr4:6968000-6987600	Weak transcription	HSMM	muscle
38	chr4:6968200-6976000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:6968400-6971400	Weak transcription	GM12878-XiMat	blood
40	chr4:6968400-6973400	Weak transcription	Brain Hippocampus Middle	brain
41	chr4:6968800-6971600	Strong transcription	HepG2	liver
42	chr4:6968800-6973800	Strong transcription	Primary T cells from cord blood	blood
43	chr4:6968800-6975000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr4:6968800-6975400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr4:6969000-6971200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr4:6969000-6972000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:6969000-6972200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr4:6969000-6972400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:6969000-6972800	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr4:6969000-6973000	Strong transcription	Fetal Thymus	thymus

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