Variant report

Variant	rs10025944
Chromosome Location	chr4:6899425-6899426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:6889897..6899719-chr4:6906701..6919549,30	K562	blood:
2	chr4:6891733..6899525-chr4:6905110..6914778,23	K562	blood:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10007838	1.00[AMR][1000 genomes]
rs10020561	1.00[AMR][1000 genomes]
rs13435398	1.00[AMR][1000 genomes]
rs13435488	1.00[AMR][1000 genomes]
rs28412715	1.00[AMR][1000 genomes]
rs28461523	1.00[AMR][1000 genomes]
rs28463590	1.00[AMR][1000 genomes]
rs28546580	1.00[AMR][1000 genomes]
rs28620599	1.00[AMR][1000 genomes]
rs28631659	1.00[AMR][1000 genomes]
rs28757648	1.00[AMR][1000 genomes]
rs73078521	1.00[ASN][1000 genomes]
rs73086431	1.00[AMR][1000 genomes]
rs73088550	1.00[AMR][1000 genomes]
rs9291119	1.00[AMR][1000 genomes]
rs9994021	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4216	chr4:6876592-6915629	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv3491705	chr4:6894126-6901649	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3491706	chr4:6894126-6901649	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv18180	chr4:6895182-6900570	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3464339	chr4:6895451-6901549	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2551916	chr4:6896381-6900776	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3494731	chr4:6896451-6901499	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464338	chr4:6896476-6899924	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3464340	chr4:6896476-6899924	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3494728	chr4:6896526-6900946	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3468303	chr4:6896756-6900820	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv1006929	chr4:6897032-6900485	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3468304	chr4:6897051-6900820	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3468302	chr4:6897051-6901149	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv3494732	chr4:6897195-6900656	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3494733	chr4:6897195-6900656	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv822465	chr4:6897283-6899705	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv1820324	chr4:6897283-6900772	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv290080	chr4:6897285-6900334	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv514195	chr4:6897482-6899564	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv14269	chr4:6897509-6899599	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	esv1825765	chr4:6897543-6899625	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv1825896	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv1826206	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv1826431	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	esv1826765	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv1827172	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	esv1829197	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv1829378	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	esv1829427	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv1830770	chr4:6897543-6899625	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	esv1831756	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	esv1832453	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	esv1834086	chr4:6897543-6899625	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	esv1835602	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	esv1836565	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	esv1838202	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	esv1840709	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv593544	chr4:6897543-6899625	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	esv1836959	chr4:6897543-6900498	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	nsv511258	chr4:6897550-6899678	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
44	esv3440470	chr4:6897876-6901424	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
45	nsv593545	chr4:6897936-6900498	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6894400-6900600	Weak transcription	Primary T cells from cord blood	blood
2	chr4:6894600-6903000	Weak transcription	HSMM	muscle
3	chr4:6894600-6903600	Weak transcription	Right Atrium	heart
4	chr4:6894800-6900600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:6894800-6900600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr4:6895400-6900600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:6895400-6900600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:6895400-6900600	Weak transcription	Fetal Thymus	thymus
9	chr4:6895400-6900600	Weak transcription	GM12878-XiMat	blood
10	chr4:6895400-6900800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:6895600-6900600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:6895800-6900600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:6895800-6901800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:6896400-6900600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:6896400-6900600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:6896400-6900800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:6896800-6900600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:6896800-6906200	Weak transcription	Liver	Liver
19	chr4:6896800-6909200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:6897000-6900600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr4:6897000-6900600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr4:6897200-6900600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:6897200-6900600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr4:6897400-6899600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:6897400-6900400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr4:6898000-6909600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:6898400-6902200	Weak transcription	K562	blood
28	chr4:6899400-6900600	Weak transcription	HepG2	liver

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