Variant report

Variant	rs10008007
Chromosome Location	chr4:166388137-166388138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166380861..166382670-chr4:166385942..166388896,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10006092	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530042	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17847602	0.81[EUR][1000 genomes]
rs2118495	0.84[EUR][1000 genomes]
rs6835167	0.82[EUR][1000 genomes]
rs7655190	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7669187	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7689571	0.84[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166380000-166388800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:166380200-166390200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:166381800-166391000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:166382800-166388800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:166382800-166391400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:166383000-166388400	Weak transcription	Aorta	Aorta
7	chr4:166383000-166389800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:166383000-166391000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:166383200-166389000	Weak transcription	Ovary	ovary
10	chr4:166383200-166391400	Weak transcription	Fetal Lung	lung
11	chr4:166383600-166389000	Weak transcription	Fetal Stomach	stomach
12	chr4:166383800-166389800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:166384200-166389200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:166384200-166389400	Weak transcription	Brain Germinal Matrix	brain
15	chr4:166384200-166390200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:166384200-166391800	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:166384400-166389000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:166385800-166391400	Weak transcription	Pancreas	Pancrea
19	chr4:166386000-166388400	Weak transcription	Fetal Brain Female	brain
20	chr4:166386000-166389200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:166386000-166391600	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:166386000-166392600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:166386000-166393000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr4:166386400-166389000	Weak transcription	Brain Anterior Caudate	brain
25	chr4:166386400-166389000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:166386400-166394000	Weak transcription	Brain Substantia Nigra	brain
27	chr4:166386400-166414400	Weak transcription	Fetal Brain Male	brain
28	chr4:166386800-166388400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:166386800-166388400	Weak transcription	Fetal Intestine Large	intestine
30	chr4:166387200-166391600	Strong transcription	HepG2	liver
31	chr4:166387400-166391400	Weak transcription	Brain Angular Gyrus	brain
32	chr4:166387600-166388200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:166387800-166391800	Weak transcription	Fetal Muscle Trunk	muscle

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