Variant report

Variant	rs2118495
Chromosome Location	chr4:166376087-166376088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10006092	0.84[EUR][1000 genomes]
rs10008007	0.84[EUR][1000 genomes]
rs1347743	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1530042	0.83[EUR][1000 genomes]
rs17687381	0.93[EUR][1000 genomes]
rs7654831	0.95[AFR][1000 genomes]
rs7655190	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7669187	0.99[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7689571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166362200-166381600	Weak transcription	Fetal Stomach	stomach
2	chr4:166362400-166381600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166362400-166382400	Weak transcription	Aorta	Aorta
4	chr4:166362400-166384600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:166362600-166379000	Weak transcription	Fetal Brain Female	brain
6	chr4:166362800-166379200	Weak transcription	Brain Anterior Caudate	brain
7	chr4:166372400-166379000	Weak transcription	Fetal Brain Male	brain
8	chr4:166375000-166376200	Enhancers	HMEC	breast
9	chr4:166375200-166376400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:166375200-166376400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:166376000-166376200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:166376000-166376400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr4:166376000-166382600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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