Variant report
| Variant | rs10009216 |
|---|---|
| Chromosome Location | chr4:97500384-97500385 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10006162 | 0.84[AFR][1000 genomes] |
| rs10007670 | 1.00[AFR][1000 genomes] |
| rs10012373 | 1.00[AFR][1000 genomes] |
| rs10019459 | 1.00[AFR][1000 genomes] |
| rs10516992 | 1.00[AFR][1000 genomes] |
| rs12330946 | 1.00[AFR][1000 genomes] |
| rs12331222 | 1.00[AFR][1000 genomes] |
| rs12331232 | 1.00[AFR][1000 genomes] |
| rs12331799 | 1.00[AFR][1000 genomes] |
| rs17025663 | 1.00[AFR][1000 genomes] |
| rs28508139 | 0.82[AFR][1000 genomes] |
| rs28532133 | 0.91[AFR][1000 genomes] |
| rs28533304 | 1.00[AFR][1000 genomes] |
| rs28559835 | 1.00[AFR][1000 genomes] |
| rs28565234 | 1.00[AFR][1000 genomes] |
| rs28615709 | 1.00[AFR][1000 genomes] |
| rs28636778 | 1.00[AFR][1000 genomes] |
| rs28655209 | 1.00[AFR][1000 genomes] |
| rs28687059 | 1.00[AFR][1000 genomes] |
| rs28889126 | 1.00[AFR][1000 genomes] |
| rs55706248 | 1.00[AFR][1000 genomes] |
| rs57434387 | 0.96[AFR][1000 genomes] |
| rs58521019 | 0.98[AFR][1000 genomes] |
| rs59844377 | 1.00[AFR][1000 genomes] |
| rs60333423 | 0.98[AFR][1000 genomes] |
| rs60421343 | 1.00[AFR][1000 genomes] |
| rs60702817 | 1.00[AFR][1000 genomes] |
| rs60857678 | 1.00[AFR][1000 genomes] |
| rs61033100 | 1.00[AFR][1000 genomes] |
| rs61110475 | 0.84[AFR][1000 genomes] |
| rs61660982 | 0.84[AFR][1000 genomes] |
| rs6816546 | 1.00[AFR][1000 genomes] |
| rs6845274 | 1.00[AFR][1000 genomes] |
| rs72889274 | 0.84[AFR][1000 genomes] |
| rs72890904 | 1.00[AFR][1000 genomes] |
| rs9992776 | 1.00[AFR][1000 genomes] |
| rs9999916 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879634 | chr4:97371381-97727113 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv879635 | chr4:97389090-97591085 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:97486000-97505000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
