Variant report

Variant	rs28559835
Chromosome Location	chr4:97481409-97481410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10006162	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10007670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10009216	1.00[AFR][1000 genomes]
rs10012373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10016768	1.00[AMR][1000 genomes]
rs10019459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032102	1.00[AMR][1000 genomes]
rs10033888	1.00[AMR][1000 genomes]
rs10516992	1.00[AFR][1000 genomes]
rs12330946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17025663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28508139	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589808	1.00[AMR][1000 genomes]
rs28601730	1.00[AMR][1000 genomes]
rs28615709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28655209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28748570	1.00[AMR][1000 genomes]
rs28889126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55706248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57434387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58265444	1.00[AMR][1000 genomes]
rs58521019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59844377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60333423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60421343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60702817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60857678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61033100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61110475	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61660982	0.84[AFR][1000 genomes]
rs6816377	1.00[AMR][1000 genomes]
rs6816546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6817880	1.00[AMR][1000 genomes]
rs6845274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876618	1.00[AMR][1000 genomes]
rs72889274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890937	1.00[AMR][1000 genomes]
rs72890971	1.00[AMR][1000 genomes]
rs73844649	1.00[AMR][1000 genomes]
rs9992776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97480400-97482000	Enhancers	Dnd41	blood
2	chr4:97481200-97481800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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