Variant report

Variant	rs58265444
Chromosome Location	chr4:97329273-97329274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10006162	1.00[AMR][1000 genomes]
rs10007670	1.00[AMR][1000 genomes]
rs10012373	1.00[AMR][1000 genomes]
rs10016768	1.00[AMR][1000 genomes]
rs10019459	1.00[AMR][1000 genomes]
rs10032102	1.00[AMR][1000 genomes]
rs10033888	1.00[AMR][1000 genomes]
rs12330946	1.00[AMR][1000 genomes]
rs12331222	1.00[AMR][1000 genomes]
rs12331232	1.00[AMR][1000 genomes]
rs12331799	1.00[AMR][1000 genomes]
rs17025663	1.00[AMR][1000 genomes]
rs28508139	1.00[AMR][1000 genomes]
rs28532133	1.00[AMR][1000 genomes]
rs28533304	1.00[AMR][1000 genomes]
rs28559835	1.00[AMR][1000 genomes]
rs28565234	1.00[AMR][1000 genomes]
rs28615709	1.00[AMR][1000 genomes]
rs28636778	1.00[AMR][1000 genomes]
rs28655209	1.00[AMR][1000 genomes]
rs28687059	1.00[AMR][1000 genomes]
rs28889126	1.00[AMR][1000 genomes]
rs55706248	1.00[AMR][1000 genomes]
rs57434387	1.00[AMR][1000 genomes]
rs58521019	1.00[AMR][1000 genomes]
rs59844377	1.00[AMR][1000 genomes]
rs60333423	1.00[AMR][1000 genomes]
rs60421343	1.00[AMR][1000 genomes]
rs60702817	1.00[AMR][1000 genomes]
rs60857678	1.00[AMR][1000 genomes]
rs61033100	1.00[AMR][1000 genomes]
rs61110475	1.00[AMR][1000 genomes]
rs6816377	1.00[AMR][1000 genomes]
rs6816546	1.00[AMR][1000 genomes]
rs6817880	1.00[AMR][1000 genomes]
rs6845274	1.00[AMR][1000 genomes]
rs72889274	1.00[AMR][1000 genomes]
rs72890904	1.00[AMR][1000 genomes]
rs72890937	1.00[AMR][1000 genomes]
rs72890971	1.00[AMR][1000 genomes]
rs9992776	1.00[AMR][1000 genomes]
rs9999916	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011487	chr4:97301762-97393803	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1009685	chr4:97308301-97392056	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97327800-97329600	Enhancers	Fetal Kidney	kidney
2	chr4:97328000-97329600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:97328000-97329600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:97328400-97329400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr4:97328800-97329400	Active TSS	Brain Cingulate Gyrus	brain
6	chr4:97328800-97329600	Enhancers	Fetal Brain Female	brain
7	chr4:97328800-97329600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr4:97328800-97329800	Enhancers	Dnd41	blood
9	chr4:97329000-97329400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:97329000-97329400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr4:97329000-97329400	Active TSS	Brain Anterior Caudate	brain
12	chr4:97329000-97329400	Active TSS	NH-A	brain
13	chr4:97329000-97329800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:97329200-97329400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:97329200-97329600	Flanking Active TSS	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links