Variant report

Variant	rs61110475
Chromosome Location	chr4:97487857-97487858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10006162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10007670	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10009216	0.84[AFR][1000 genomes]
rs10012373	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10016768	1.00[AMR][1000 genomes]
rs10019459	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032102	1.00[AMR][1000 genomes]
rs10033888	1.00[AMR][1000 genomes]
rs10516992	0.84[AFR][1000 genomes]
rs12330946	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331222	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331232	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331799	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17025663	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28508139	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533304	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28559835	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565234	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589808	1.00[AMR][1000 genomes]
rs28601730	1.00[AMR][1000 genomes]
rs28615709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636778	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28655209	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687059	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28748570	1.00[AMR][1000 genomes]
rs28889126	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55706248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57434387	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58265444	1.00[AMR][1000 genomes]
rs58521019	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59844377	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60333423	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60421343	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60702817	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60857678	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61033100	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6816377	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6816546	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6817880	1.00[AMR][1000 genomes]
rs6845274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876618	1.00[AMR][1000 genomes]
rs72889274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890904	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890937	1.00[AMR][1000 genomes]
rs72890971	1.00[AMR][1000 genomes]
rs73844649	1.00[AMR][1000 genomes]
rs9992776	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9999916	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97486000-97505000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:97487800-97488400	Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links