Variant report

Variant	rs28589808
Chromosome Location	chr4:97522842-97522843
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10004674	0.93[AFR][1000 genomes]
rs10006162	1.00[AMR][1000 genomes]
rs10007670	1.00[AMR][1000 genomes]
rs10011151	0.85[AFR][1000 genomes]
rs10012373	1.00[AMR][1000 genomes]
rs10016768	1.00[AMR][1000 genomes]
rs10019459	1.00[AMR][1000 genomes]
rs10032102	1.00[AMR][1000 genomes]
rs10033888	1.00[AMR][1000 genomes]
rs12330946	1.00[AMR][1000 genomes]
rs12331222	1.00[AMR][1000 genomes]
rs12331232	1.00[AMR][1000 genomes]
rs12331799	1.00[AMR][1000 genomes]
rs17025663	1.00[AMR][1000 genomes]
rs28508139	1.00[AMR][1000 genomes]
rs28532133	1.00[AMR][1000 genomes]
rs28533304	1.00[AMR][1000 genomes]
rs28559835	1.00[AMR][1000 genomes]
rs28565234	1.00[AMR][1000 genomes]
rs28601730	1.00[AMR][1000 genomes]
rs28615709	1.00[AMR][1000 genomes]
rs28621617	0.85[AFR][1000 genomes]
rs28636778	1.00[AMR][1000 genomes]
rs28655209	1.00[AMR][1000 genomes]
rs28687059	1.00[AMR][1000 genomes]
rs28748570	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28889126	1.00[AMR][1000 genomes]
rs55706248	1.00[AMR][1000 genomes]
rs57434387	1.00[AMR][1000 genomes]
rs58521019	1.00[AMR][1000 genomes]
rs59844377	1.00[AMR][1000 genomes]
rs60333423	1.00[AMR][1000 genomes]
rs60421343	1.00[AMR][1000 genomes]
rs60702817	1.00[AMR][1000 genomes]
rs60857678	1.00[AMR][1000 genomes]
rs61033100	1.00[AMR][1000 genomes]
rs61110475	1.00[AMR][1000 genomes]
rs6816377	1.00[AMR][1000 genomes]
rs6816546	1.00[AMR][1000 genomes]
rs6817880	1.00[AMR][1000 genomes]
rs6845274	1.00[AMR][1000 genomes]
rs72876618	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889274	1.00[AMR][1000 genomes]
rs72890904	1.00[AMR][1000 genomes]
rs72890937	1.00[AMR][1000 genomes]
rs72890971	1.00[AMR][1000 genomes]
rs73844649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992776	1.00[AMR][1000 genomes]
rs9999916	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2757944	chr4:97509566-97809092	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759268	chr4:97509566-97809092	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97520000-97523800	Weak transcription	Ovary	ovary
2	chr4:97520600-97523600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:97521000-97524800	Weak transcription	Fetal Heart	heart

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