Variant report

Variant	rs10010031
Chromosome Location	chr4:174800142-174800143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10011380	1.00[AMR][1000 genomes]
rs10014600	1.00[AMR][1000 genomes]
rs10027769	1.00[AMR][1000 genomes]
rs10032108	1.00[AMR][1000 genomes]
rs28391570	1.00[AMR][1000 genomes]
rs28418416	1.00[AMR][1000 genomes]
rs28654273	1.00[AMR][1000 genomes]
rs28739392	1.00[AMR][1000 genomes]
rs28758680	1.00[AMR][1000 genomes]
rs28841592	1.00[AMR][1000 genomes]
rs9995227	1.00[AMR][1000 genomes]
rs9995516	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881172	chr4:174772568-174873969	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830154	chr4:174781983-174940640	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174795400-174811000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:174799200-174800600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:174799600-174800600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:174799800-174800600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:174799800-174802000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:174800000-174800600	Enhancers	Fetal Lung	lung
7	chr4:174800000-174800600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr4:174800000-174801800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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