Variant report
| Variant | rs28841592 |
|---|---|
| Chromosome Location | chr4:174834998-174834999 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr4:174834689-174835018 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | STAT3 | chr4:174834699-174835027 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | STAT3 | chr4:174834681-174835042 | MCF10A-Er-Src | breast: | n/a | n/a |
| 4 | STAT3 | chr4:174834745-174835000 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250043 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10010031 | 1.00[AMR][1000 genomes] |
| rs10011380 | 1.00[AMR][1000 genomes] |
| rs10014600 | 1.00[AMR][1000 genomes] |
| rs10027769 | 1.00[AMR][1000 genomes] |
| rs10032108 | 1.00[AMR][1000 genomes] |
| rs2060513 | 1.00[AMR][1000 genomes] |
| rs28391570 | 1.00[AMR][1000 genomes] |
| rs28418416 | 1.00[AMR][1000 genomes] |
| rs28654273 | 1.00[AMR][1000 genomes] |
| rs28739392 | 1.00[AMR][1000 genomes] |
| rs28758680 | 1.00[AMR][1000 genomes] |
| rs9995227 | 1.00[AMR][1000 genomes] |
| rs9995516 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881172 | chr4:174772568-174873969 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv830154 | chr4:174781983-174940640 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
