Variant report

Variant	rs28654273
Chromosome Location	chr4:174853732-174853733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10010031	1.00[AMR][1000 genomes]
rs10011380	1.00[AMR][1000 genomes]
rs10014600	1.00[AMR][1000 genomes]
rs10027769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2060513	1.00[AMR][1000 genomes]
rs28391570	1.00[AMR][1000 genomes]
rs28418416	1.00[AMR][1000 genomes]
rs28739392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28758680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28841592	1.00[AMR][1000 genomes]
rs9995227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881172	chr4:174772568-174873969	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830154	chr4:174781983-174940640	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174850600-174856200	Weak transcription	Aorta	Aorta
2	chr4:174851800-174856000	Weak transcription	Gastric	stomach
3	chr4:174852000-174856200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:174852000-174856400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:174852200-174855400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:174852400-174856000	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:174852600-174856200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:174853200-174854000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:174853200-174856000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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