Variant report

Variant	rs1001045
Chromosome Location	chr4:166381579-166381580
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166380861..166382670-chr4:166385942..166388896,2	MCF-7	breast:
2	chr4:166032514..166034118-chr4:166380373..166382372,2	K562	blood:
3	chr4:166364459..166365959-chr4:166381154..166383364,2	K562	blood:
4	chr4:166297509..166301648-chr4:166381401..166387402,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction
ENSG00000170088	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13147995	0.88[YRI][hapmap];0.82[EUR][1000 genomes]
rs1370686	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1583646	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58746438	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6839600	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7441954	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7654527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685303	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166362200-166381600	Weak transcription	Fetal Stomach	stomach
2	chr4:166362400-166381600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166362400-166382400	Weak transcription	Aorta	Aorta
4	chr4:166362400-166384600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:166376000-166382600	Weak transcription	HepG2	liver
6	chr4:166378800-166386800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:166379000-166382800	Weak transcription	Fetal Lung	lung
8	chr4:166379000-166385000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:166379400-166382400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:166379400-166385600	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:166380000-166384400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:166380000-166388800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:166380200-166382400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:166380200-166382400	Weak transcription	Adipose Nuclei	Adipose
15	chr4:166380200-166384000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:166380200-166386200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:166380200-166390200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:166380400-166382600	Weak transcription	Brain Anterior Caudate	brain
19	chr4:166380800-166381800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:166381200-166382000	Enhancers	Fetal Brain Male	brain
21	chr4:166381200-166383000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:166381400-166381600	Enhancers	Fetal Brain Female	brain
23	chr4:166381400-166382000	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr4:166381400-166383800	Enhancers	HSMMtube	muscle

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