Variant report

Variant	rs1583646
Chromosome Location	chr4:166396222-166396223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166389355..166390868-chr4:166395742..166398705,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1001045	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13147995	0.82[MKK][hapmap];0.89[TSI][hapmap]
rs1370686	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612362	0.83[AMR][1000 genomes]
rs58746438	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7441954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654527	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9685303	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1583646	CBR4	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166386400-166414400	Weak transcription	Fetal Brain Male	brain
2	chr4:166388200-166397000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:166389800-166414600	Weak transcription	Ovary	ovary
4	chr4:166390400-166397000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:166390600-166407200	Weak transcription	Aorta	Aorta
6	chr4:166391600-166414400	Weak transcription	Fetal Kidney	kidney
7	chr4:166391800-166396800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:166392200-166405600	Weak transcription	Pancreas	Pancrea
9	chr4:166392200-166419600	Weak transcription	Brain Angular Gyrus	brain
10	chr4:166393600-166408600	Weak transcription	Brain Anterior Caudate	brain
11	chr4:166394000-166396600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr4:166394000-166397400	Enhancers	K562	blood
13	chr4:166394200-166396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:166394600-166408600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:166395000-166397600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:166395200-166396400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:166395200-166396600	Weak transcription	Lung	lung
18	chr4:166395400-166396400	Weak transcription	Fetal Stomach	stomach
19	chr4:166395400-166396600	Weak transcription	Esophagus	oesophagus
20	chr4:166395400-166397600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:166395400-166398200	Strong transcription	HepG2	liver
22	chr4:166395400-166408600	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:166395600-166397600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:166395600-166419400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:166395800-166397400	Strong transcription	Fetal Brain Female	brain
26	chr4:166396000-166396400	Weak transcription	Fetal Lung	lung
27	chr4:166396000-166396600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:166396200-166398000	Strong transcription	Brain Germinal Matrix	brain

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