Variant report

Variant	rs9685303
Chromosome Location	chr4:166382105-166382106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166380861..166382670-chr4:166385942..166388896,2	MCF-7	breast:
2	chr4:166032514..166034118-chr4:166380373..166382372,2	K562	blood:
3	chr4:166364459..166365959-chr4:166381154..166383364,2	K562	blood:
4	chr4:166297509..166301648-chr4:166381401..166387402,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170088	Chromatin interaction
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1001045	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147995	0.82[EUR][1000 genomes]
rs1370686	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1583646	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58746438	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6839600	0.82[EUR][1000 genomes]
rs7441954	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7654527	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166362400-166382400	Weak transcription	Aorta	Aorta
2	chr4:166362400-166384600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:166376000-166382600	Weak transcription	HepG2	liver
4	chr4:166378800-166386800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:166379000-166382800	Weak transcription	Fetal Lung	lung
6	chr4:166379000-166385000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:166379400-166382400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:166379400-166385600	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:166380000-166384400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:166380000-166388800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:166380200-166382400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:166380200-166382400	Weak transcription	Adipose Nuclei	Adipose
13	chr4:166380200-166384000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:166380200-166386200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:166380200-166390200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:166380400-166382600	Weak transcription	Brain Anterior Caudate	brain
17	chr4:166381200-166383000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:166381400-166383800	Enhancers	HSMMtube	muscle
19	chr4:166381600-166382200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:166381600-166382800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr4:166381600-166382800	Enhancers	Placenta	Placenta
22	chr4:166381600-166383600	Enhancers	Fetal Muscle Leg	muscle
23	chr4:166381600-166383600	Enhancers	Fetal Stomach	stomach
24	chr4:166381800-166382200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:166381800-166383800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:166381800-166384200	Weak transcription	Fetal Brain Female	brain
27	chr4:166381800-166391000	Weak transcription	Fetal Intestine Small	intestine
28	chr4:166382000-166382200	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:166382000-166384000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr4:166382000-166384800	Weak transcription	Fetal Brain Male	brain

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