Variant report
| Variant | rs10013306 |
|---|---|
| Chromosome Location | chr4:120729907-120729908 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr4:120729864-120729935 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250772 | TF binding region |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10452196 | 0.95[EUR][1000 genomes] |
| rs10518339 | 0.95[EUR][1000 genomes] |
| rs16997607 | 0.95[EUR][1000 genomes] |
| rs17006835 | 0.89[EUR][1000 genomes] |
| rs17006879 | 0.89[EUR][1000 genomes] |
| rs17006974 | 0.95[EUR][1000 genomes] |
| rs4586911 | 0.81[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs58946926 | 0.89[EUR][1000 genomes] |
| rs6836195 | 0.89[EUR][1000 genomes] |
| rs6845298 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6852136 | 0.89[EUR][1000 genomes] |
| rs6855466 | 0.89[EUR][1000 genomes] |
| rs72910441 | 0.89[EUR][1000 genomes] |
| rs72910468 | 0.89[EUR][1000 genomes] |
| rs72910474 | 0.89[EUR][1000 genomes] |
| rs72910481 | 0.95[EUR][1000 genomes] |
| rs72910484 | 0.95[EUR][1000 genomes] |
| rs72910490 | 0.95[EUR][1000 genomes] |
| rs72910492 | 0.95[EUR][1000 genomes] |
| rs9307481 | 0.89[EUR][1000 genomes] |
| rs9993750 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 3 | esv3443538 | chr4:120725398-120755486 | Weak transcription Enhancers | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
