Variant report

Variant	rs9307481
Chromosome Location	chr4:120776148-120776149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10013306	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10452196	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10518339	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16997607	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17006835	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17006879	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17006974	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4586911	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58946926	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6836195	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6845298	0.89[EUR][1000 genomes]
rs6852136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855466	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910441	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910468	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910474	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910481	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72910484	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72910490	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72910492	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9993750	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120758600-120794000	Weak transcription	Aorta	Aorta
2	chr4:120775200-120776200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:120775400-120776200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:120775400-120776400	Enhancers	Osteobl	bone
5	chr4:120775600-120776200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:120776000-120776400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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