Variant report
| Variant | rs4586911 |
|---|---|
| Chromosome Location | chr4:120752385-120752386 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10013306 | 1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10452196 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10518339 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs16997607 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17006835 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17006879 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17006974 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs58946926 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6836195 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6845298 | 0.89[EUR][1000 genomes] |
| rs6852136 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6855466 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72910441 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72910468 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72910474 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72910481 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72910484 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72910490 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72910492 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9307481 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9993750 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 3 | esv3443538 | chr4:120725398-120755486 | Weak transcription Enhancers | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:120751000-120753800 | Weak transcription | Aorta | Aorta |
