Variant report

Variant	rs10013941
Chromosome Location	chr4:47451744-47451745
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47386562..47388237-chr4:47450427..47451934,2	K562	blood:
2	chr4:47447345..47449625-chr4:47449993..47452895,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10001129	0.95[AFR][1000 genomes]
rs28437730	0.92[AFR][1000 genomes]
rs28437900	0.97[AFR][1000 genomes]
rs28564999	0.89[AFR][1000 genomes]
rs28626278	0.95[AFR][1000 genomes]
rs28664264	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47436800-47465000	Weak transcription	Gastric	stomach
2	chr4:47438600-47464200	Weak transcription	Small Intestine	intestine
3	chr4:47441000-47456000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:47442200-47464000	Weak transcription	Left Ventricle	heart
5	chr4:47442800-47451800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:47443600-47464000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:47444000-47453600	Weak transcription	HSMMtube	muscle
8	chr4:47445000-47454800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:47445200-47453600	Weak transcription	NHDF-Ad	bronchial
10	chr4:47445200-47454600	Weak transcription	Fetal Intestine Small	intestine
11	chr4:47445400-47453600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:47445400-47465000	Weak transcription	Lung	lung
13	chr4:47445600-47452000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:47445600-47453400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:47445600-47453600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr4:47445600-47454600	Weak transcription	Ovary	ovary
17	chr4:47445600-47464000	Weak transcription	Pancreas	Pancrea
18	chr4:47445600-47464200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:47445600-47464200	Weak transcription	Thymus	Thymus
20	chr4:47445800-47465000	Weak transcription	Aorta	Aorta
21	chr4:47446000-47465000	Weak transcription	Esophagus	oesophagus
22	chr4:47446200-47451800	Weak transcription	Dnd41	blood
23	chr4:47446200-47452000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr4:47446200-47453600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr4:47446200-47453600	Weak transcription	GM12878-XiMat	blood
26	chr4:47446600-47463000	Weak transcription	Brain Anterior Caudate	brain
27	chr4:47446800-47452000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr4:47447000-47453400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:47447000-47453600	Weak transcription	Fetal Thymus	thymus
30	chr4:47447000-47461400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:47447200-47451800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr4:47447200-47451800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr4:47447200-47452000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:47447200-47453600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:47447200-47453800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:47447600-47452000	Weak transcription	Primary B cells from cord blood	blood
37	chr4:47448000-47452000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:47449000-47452400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:47449200-47452200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr4:47449200-47455000	Weak transcription	Fetal Brain Female	brain
41	chr4:47449600-47452000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr4:47449600-47464200	Weak transcription	Fetal Brain Male	brain
43	chr4:47449800-47452200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:47449800-47452600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:47449800-47465000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr4:47450000-47451800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:47450000-47451800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:47450000-47454800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:47450200-47451800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:47450200-47451800	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links