Variant report

Variant	rs10014787
Chromosome Location	chr4:78660684-78660685
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78658089..78660891-chr4:78661211..78663779,2	K562	blood:

Variant related genes	Relation type
ENSG00000138767	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10049574	1.00[AFR][1000 genomes]
rs1118761	1.00[AFR][1000 genomes]
rs1909938	1.00[AFR][1000 genomes]
rs355672	1.00[AFR][1000 genomes]
rs3849579	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4859862	1.00[AFR][1000 genomes]
rs6533179	1.00[AFR][1000 genomes]
rs7687049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829976	chr4:78576657-78757798	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv518757	chr4:78637265-78695138	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10014787	CNOT6L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78629200-78676600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:78632600-78697800	Weak transcription	Colonic Mucosa	Colon
3	chr4:78637400-78661200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:78637400-78673200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:78639200-78661200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:78639400-78671200	Weak transcription	Brain Germinal Matrix	brain
7	chr4:78640800-78697800	Weak transcription	Stomach Mucosa	stomach
8	chr4:78641000-78665000	Weak transcription	Fetal Brain Male	brain
9	chr4:78643800-78714000	Weak transcription	Lung	lung
10	chr4:78644800-78666600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:78645000-78664000	Weak transcription	A549	lung
12	chr4:78645000-78676600	Weak transcription	Hela-S3	cervix
13	chr4:78645400-78696200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:78645600-78663200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:78646000-78664000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:78646200-78663800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:78646800-78677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:78649800-78660800	Weak transcription	HSMM	muscle
19	chr4:78650000-78663200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:78650000-78682400	Weak transcription	Brain Substantia Nigra	brain
21	chr4:78650000-78683800	Weak transcription	NHDF-Ad	bronchial
22	chr4:78650200-78661200	Weak transcription	Aorta	Aorta
23	chr4:78650200-78661200	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:78650200-78661200	Weak transcription	Left Ventricle	heart
25	chr4:78650200-78661200	Weak transcription	Ovary	ovary
26	chr4:78650200-78661200	Weak transcription	Pancreas	Pancrea
27	chr4:78650200-78661800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:78650200-78662600	Weak transcription	Right Ventricle	heart
29	chr4:78650200-78663800	Weak transcription	Fetal Brain Female	brain
30	chr4:78650200-78673000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:78650200-78673000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:78650200-78697800	Weak transcription	Gastric	stomach
33	chr4:78650200-78697800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr4:78650200-78702800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr4:78650200-78720000	Weak transcription	Spleen	Spleen
36	chr4:78650400-78660800	Weak transcription	Brain Angular Gyrus	brain
37	chr4:78650600-78665800	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:78650800-78697800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:78652200-78661200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:78653200-78673200	Weak transcription	Fetal Heart	heart
41	chr4:78654200-78697600	Weak transcription	HSMMtube	muscle
42	chr4:78656400-78661200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:78656600-78661200	Weak transcription	Thymus	Thymus
44	chr4:78656600-78667800	Strong transcription	Fetal Thymus	thymus
45	chr4:78657000-78660800	Weak transcription	HepG2	liver
46	chr4:78657000-78695600	Weak transcription	Small Intestine	intestine
47	chr4:78657400-78673000	Weak transcription	Fetal Intestine Small	intestine
48	chr4:78657800-78663400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:78657800-78664800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:78658600-78669400	Strong transcription	Primary B cells from peripheral blood	blood

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