Variant report

Variant	rs1909938
Chromosome Location	chr4:78612162-78612163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10014787	1.00[AFR][1000 genomes]
rs1118761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs355672	1.00[AFR][1000 genomes]
rs3849579	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs4859862	1.00[AFR][1000 genomes]
rs6533179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829976	chr4:78576657-78757798	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78606000-78616400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:78611600-78616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:78611800-78616000	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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