Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:143637297..143639595-chr4:143640905..143643324,3	MCF-7	breast:
2	chr4:143393131..143399799-chr4:143636317..143645681,15	MCF-7	breast:
3	chr4:143392644..143398601-chr4:143638137..143645320,14	MCF-7	breast:
4	chr4:143535273..143539133-chr4:143641663..143644812,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

rSNPs within LD-proxies of this variant (count:3)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

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Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143630800-143650200	Weak transcription	Aorta	Aorta
2	chr4:143635000-143648200	Weak transcription	Thymus	Thymus
3	chr4:143637200-143653000	Weak transcription	Left Ventricle	heart
4	chr4:143639600-143647000	Enhancers	Dnd41	blood
5	chr4:143640200-143642200	Enhancers	NHEK	skin
6	chr4:143640200-143642800	Enhancers	HMEC	breast
7	chr4:143641000-143642600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:143641000-143642600	Enhancers	NH-A	brain
9	chr4:143641200-143642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:143641400-143642400	Weak transcription	Osteobl	bone
11	chr4:143641400-143643200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:143641400-143646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:143641400-143648400	Weak transcription	Primary T cells from cord blood	blood
14	chr4:143641600-143642200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:143641600-143642600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:143641600-143642800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:143641600-143643600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr4:143641600-143652800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:143641800-143646200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:143642000-143644000	Enhancers	Fetal Heart	heart

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