Variant report

Variant	rs10033676
Chromosome Location	chr4:143717975-143717976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10015977	0.84[AFR][1000 genomes]
rs10023784	1.00[AFR][1000 genomes]
rs10033400	0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs28369300	0.94[AFR][1000 genomes]
rs28391627	0.85[AFR][1000 genomes]
rs28411004	0.81[AFR][1000 genomes]
rs28478866	0.85[AFR][1000 genomes]
rs28529221	0.85[AFR][1000 genomes]
rs28715927	0.85[AFR][1000 genomes]
rs9999487	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698400-143719000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
3	chr4:143709200-143732200	Weak transcription	Left Ventricle	heart
4	chr4:143715800-143720600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143716000-143718400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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