Variant report

Variant	rs1001619
Chromosome Location	chr15:58477507-58477508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58260270..58262441-chr15:58476385..58479078,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10851634	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11071369	0.86[CEU][hapmap];0.81[CHB][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11071370	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs11854297	1.00[ASW][hapmap];0.86[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1663247	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1663248	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1711053	0.85[AFR][1000 genomes]
rs1711055	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1711057	0.86[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1867380	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1992587	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2077735	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs2249783	1.00[ASW][hapmap];0.86[CEU][hapmap];0.81[CHB][hapmap];0.84[GIH][hapmap];0.92[LWK][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2292712	0.81[EUR][1000 genomes]
rs2414548	0.85[AFR][1000 genomes]
rs34717982	0.86[CEU][hapmap]
rs3784252	0.88[AFR][1000 genomes]
rs3858889	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3858890	0.86[CEU][hapmap];0.81[CHB][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4775017	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4775018	0.86[CEU][hapmap];0.81[CHB][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6493985	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493986	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs717868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7496568	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8035209	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs935208	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58451200-58481000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:58458400-58477800	Strong transcription	Liver	Liver
3	chr15:58471600-58481200	Weak transcription	Right Atrium	heart
4	chr15:58473000-58477600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:58473000-58478400	Weak transcription	Spleen	Spleen
6	chr15:58475200-58481000	Weak transcription	K562	blood
7	chr15:58476400-58478000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:58476800-58477800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:58477000-58477800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:58477000-58479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:58477200-58478400	Enhancers	GM12878-XiMat	blood
12	chr15:58477400-58478200	Enhancers	Primary T cells from cord blood	blood

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