Variant report

Variant	rs8035209
Chromosome Location	chr15:58492833-58492834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AQP9-2	chr15:58492805-58493217	NONHSAT044101

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1001619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10851634	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[EUR][1000 genomes]
rs11071369	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11071370	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs11854297	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[EUR][1000 genomes]
rs1663248	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs16939962	0.87[CEU][hapmap]
rs1711057	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs1867380	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1992587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2063901	0.85[CEU][hapmap]
rs2077735	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2249783	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[EUR][1000 genomes]
rs34717982	1.00[CEU][hapmap]
rs3858889	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs3858890	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4775018	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6493985	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493986	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs717868	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7496568	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs935208	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58492000-58493000	Weak transcription	Pancreas	Pancrea
2	chr15:58492800-58493000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:58492800-58493000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:58492800-58493200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:58492800-58493200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:58492800-58494000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:58492800-58494800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:58492800-58497800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:58492800-58498400	Enhancers	NHDF-Ad	bronchial

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