Variant report

Variant	rs10016745
Chromosome Location	chr4:144363796-144363797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10016707	0.90[AFR][1000 genomes]
rs10017771	0.82[YRI][hapmap]
rs10023724	0.90[YRI][hapmap]
rs10032404	0.84[AFR][1000 genomes]
rs12331219	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17017760	0.91[YRI][hapmap]
rs28771087	0.84[AFR][1000 genomes]
rs61466473	0.81[AFR][1000 genomes]
rs72949186	1.00[AFR][1000 genomes]
rs9991495	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757960	chr4:144348293-145131592	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv2759288	chr4:144348293-145131592	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1019980	chr4:144350575-144399936	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144327800-144388200	Weak transcription	HepG2	liver
2	chr4:144333000-144364600	Weak transcription	NHEK	skin
3	chr4:144336400-144392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:144339400-144394600	Weak transcription	Colonic Mucosa	Colon
5	chr4:144342000-144382000	Weak transcription	Fetal Kidney	kidney
6	chr4:144347000-144382600	Weak transcription	Gastric	stomach
7	chr4:144351600-144365000	Weak transcription	NHLF	lung
8	chr4:144352400-144382200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:144353000-144365400	Weak transcription	Small Intestine	intestine
10	chr4:144353200-144398600	Weak transcription	Brain Germinal Matrix	brain
11	chr4:144353600-144400000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:144354600-144364000	Strong transcription	Primary B cells from cord blood	blood
13	chr4:144355200-144382400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:144355600-144388200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:144356000-144371600	Weak transcription	Fetal Intestine Small	intestine
16	chr4:144357800-144365000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:144358000-144366800	Weak transcription	Thymus	Thymus
18	chr4:144358200-144387000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:144358400-144384400	Weak transcription	HSMM	muscle
20	chr4:144359000-144363800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:144359800-144363800	Strong transcription	Primary hematopoietic stem cells	blood
22	chr4:144359800-144364200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:144359800-144364400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr4:144359800-144364800	Weak transcription	Osteobl	bone
25	chr4:144359800-144366800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:144359800-144382600	Weak transcription	Esophagus	oesophagus
27	chr4:144360000-144365800	Weak transcription	Psoas Muscle	Psoas
28	chr4:144360000-144380600	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:144360000-144388400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr4:144360200-144364800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:144360200-144365000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:144360200-144366200	Weak transcription	HMEC	breast
33	chr4:144360200-144367200	Weak transcription	Pancreas	Pancrea
34	chr4:144360200-144371600	Weak transcription	Fetal Stomach	stomach
35	chr4:144360200-144380400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr4:144360200-144382400	Weak transcription	Aorta	Aorta
37	chr4:144360200-144383800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr4:144360200-144387200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:144360200-144399000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:144360600-144376200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:144360800-144365400	Weak transcription	HUVEC	blood vessel
42	chr4:144361400-144363800	Enhancers	Brain Anterior Caudate	brain
43	chr4:144361600-144365000	Weak transcription	HSMMtube	muscle
44	chr4:144361600-144376200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr4:144361600-144390400	Weak transcription	K562	blood
46	chr4:144361800-144365200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr4:144361800-144381600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:144362000-144365000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:144362000-144365400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr4:144362000-144366600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links