Variant report

Variant	rs10017261
Chromosome Location	chr4:110849004-110849005
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10011112	0.87[EUR][1000 genomes]
rs10014383	0.90[EUR][1000 genomes]
rs10023272	0.86[EUR][1000 genomes]
rs10029105	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10029654	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10213531	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1024600	0.88[EUR][1000 genomes]
rs10470911	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10488881	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11098056	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11568903	0.83[EUR][1000 genomes]
rs11568950	0.88[EUR][1000 genomes]
rs11568972	0.87[EUR][1000 genomes]
rs2024114	0.90[EUR][1000 genomes]
rs2067004	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2190909	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2237041	0.91[EUR][1000 genomes]
rs2237045	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2250616	0.90[EUR][1000 genomes]
rs2282785	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2298977	0.91[EUR][1000 genomes]
rs2347136	0.90[EUR][1000 genomes]
rs28437404	0.87[EUR][1000 genomes]
rs28535066	0.88[EUR][1000 genomes]
rs28540029	0.90[EUR][1000 genomes]
rs28564978	0.90[EUR][1000 genomes]
rs28629923	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28672708	0.91[EUR][1000 genomes]
rs28734982	0.87[EUR][1000 genomes]
rs3764861	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3775967	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3796945	0.90[EUR][1000 genomes]
rs3796946	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3822288	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4279279	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4698755	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4698756	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4698800	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4698801	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62327604	0.90[EUR][1000 genomes]
rs6533481	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6837717	0.88[EUR][1000 genomes]
rs7655579	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7668520	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7680062	0.81[AMR][1000 genomes]
rs881878	0.89[EUR][1000 genomes]
rs9307347	0.87[EUR][1000 genomes]
rs9992755	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv1813951	chr4:110840748-110862637	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv266817	chr4:110849002-110849005	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv1715236	chr4:110849003-110849005	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110836800-110849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110840600-110849200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:110842800-110849200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:110843000-110876200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:110843200-110849200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:110843200-110851000	Weak transcription	Pancreas	Pancrea
7	chr4:110844000-110849400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:110844000-110850400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:110849000-110849400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:110849000-110850600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:110849000-110851600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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