Variant report

Variant	rs10014383
Chromosome Location	chr4:110848319-110848320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10002971	0.87[EUR][1000 genomes]
rs10011112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10017261	0.90[EUR][1000 genomes]
rs10023272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10029105	0.98[EUR][1000 genomes]
rs10029654	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs10213531	0.96[EUR][1000 genomes]
rs1024600	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10470911	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10488881	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11098056	0.93[EUR][1000 genomes]
rs11568903	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11568905	0.82[EUR][1000 genomes]
rs11568950	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11568972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11568994	0.87[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs17238095	0.94[ASN][1000 genomes]
rs17253063	0.87[EUR][1000 genomes]
rs17316633	0.94[ASN][1000 genomes]
rs2024114	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2067004	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs2190909	0.95[EUR][1000 genomes]
rs2237041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237045	0.94[EUR][1000 genomes]
rs2250616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2282785	0.98[EUR][1000 genomes]
rs2298977	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2347136	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28437404	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28535066	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28540029	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28564978	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28629923	0.97[EUR][1000 genomes]
rs28672708	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28734982	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3764861	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs3775967	0.97[EUR][1000 genomes]
rs3796945	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3796946	0.95[CEU][hapmap];0.98[EUR][1000 genomes]
rs3822288	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs4279279	0.95[EUR][1000 genomes]
rs4698755	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs4698756	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs4698800	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs4698801	0.87[CEU][hapmap];0.95[EUR][1000 genomes]
rs62327602	0.94[ASN][1000 genomes]
rs62327604	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6533481	0.98[EUR][1000 genomes]
rs6837717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6850557	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs7655579	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs7668520	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs7680062	0.82[EUR][1000 genomes]
rs881878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9307347	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9991904	0.81[JPT][hapmap]
rs9992755	0.96[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv1805263	chr4:110840722-110848490	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1813951	chr4:110840748-110862637	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110836800-110849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110840600-110849200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:110842800-110849200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:110843000-110876200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:110843200-110849200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:110843200-110851000	Weak transcription	Pancreas	Pancrea
7	chr4:110844000-110849400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:110844000-110850400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:110848200-110848400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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