Variant report

Variant	rs9991904
Chromosome Location	chr4:110922579-110922580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110920202..110921754-chr4:110921805..110924269,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10002971	0.91[AMR][1000 genomes]
rs10011112	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs10014383	0.81[JPT][hapmap]
rs10023272	0.81[JPT][hapmap]
rs1024600	0.81[JPT][hapmap]
rs11568972	0.81[JPT][hapmap]
rs11568994	0.84[CEU][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.88[AMR][1000 genomes]
rs11569100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17041245	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17253063	0.88[AMR][1000 genomes]
rs17320827	0.84[ASN][1000 genomes]
rs2237041	0.81[JPT][hapmap];0.88[MEX][hapmap]
rs2250616	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs62325265	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325266	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325289	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533487	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6837717	0.81[JPT][hapmap]
rs6850557	0.96[CEU][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs720419	0.87[EUR][1000 genomes]
rs721412	0.84[EUR][1000 genomes]
rs7440841	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7685010	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7698924	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs881878	0.81[JPT][hapmap];0.89[MEX][hapmap]
rs9999824	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9991904	GAR1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas
4	chr4:110907800-110927400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:110910400-110935200	Weak transcription	Pancreas	Pancrea
6	chr4:110910600-110929800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:110910800-110926800	Weak transcription	Fetal Heart	heart
8	chr4:110919000-110935200	Weak transcription	Left Ventricle	heart
9	chr4:110920800-110935800	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:110921000-110923400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:110921000-110924800	Weak transcription	Fetal Intestine Large	intestine
12	chr4:110921000-110926800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:110921000-110926800	Weak transcription	HepG2	liver
14	chr4:110921000-110927600	Weak transcription	Fetal Intestine Small	intestine

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