Variant report

Variant	rs721412
Chromosome Location	chr4:110947478-110947479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10488881	0.83[MEX][hapmap]
rs11569100	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs17041245	0.94[EUR][1000 genomes]
rs3796946	0.83[MEX][hapmap]
rs3822288	0.83[MEX][hapmap]
rs4698800	0.83[MEX][hapmap]
rs62325265	0.84[EUR][1000 genomes]
rs62325266	0.93[EUR][1000 genomes]
rs62325289	0.93[EUR][1000 genomes]
rs6533487	0.96[EUR][1000 genomes]
rs6850557	0.83[CEU][hapmap]
rs720419	0.96[EUR][1000 genomes]
rs7440841	0.95[EUR][1000 genomes]
rs7685010	0.96[EUR][1000 genomes]
rs7698924	0.95[EUR][1000 genomes]
rs9991904	0.87[CEU][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs9999824	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs721412	GAR1	cis	cerebellum	SCAN
rs721412	CYP2U1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110945400-110949000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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