Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110943212..110945000-chr4:110945421..110947872,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10011112	0.83[MEX][hapmap]
rs11568994	0.82[GIH][hapmap];0.94[MEX][hapmap]
rs11569100	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17041245	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17320827	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17320841	0.92[JPT][hapmap]
rs2237041	0.88[MEX][hapmap]
rs2250616	0.83[MEX][hapmap]
rs62325265	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325266	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62325289	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533487	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6850557	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs720419	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs721412	0.95[EUR][1000 genomes]
rs7685010	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7698924	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs881878	0.89[MEX][hapmap]
rs9991904	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9999824	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7440841	GAR1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110945400-110949000	Enhancers	Brain Germinal Matrix	brain
2	chr4:110946200-110947400	Enhancers	Fetal Lung	lung

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