Variant report

Variant	rs62325266
Chromosome Location	chr4:110941216-110941217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11569100	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17041245	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17320827	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62325265	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533487	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs720419	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs721412	0.93[EUR][1000 genomes]
rs7440841	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7685010	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7698924	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9991904	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9999824	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763384	chr4:110939666-110942596	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110930400-110941600	Weak transcription	Fetal Heart	heart
2	chr4:110930800-110941600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:110931000-110941600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:110941000-110941400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:110941000-110941400	Enhancers	HSMM	muscle
6	chr4:110941000-110941600	Enhancers	Fetal Stomach	stomach
7	chr4:110941000-110941800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:110941000-110941800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:110941000-110941800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:110941000-110941800	Enhancers	Fetal Lung	lung
11	chr4:110941000-110942000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:110941000-110942200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:110941000-110942400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:110941000-110942600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:110941200-110941600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:110941200-110941600	Enhancers	NH-A	brain
17	chr4:110941200-110941800	Enhancers	Brain Germinal Matrix	brain
18	chr4:110941200-110941800	Enhancers	Fetal Kidney	kidney
19	chr4:110941200-110941800	Enhancers	HepG2	liver
20	chr4:110941200-110941800	Enhancers	Osteobl	bone
21	chr4:110941200-110942000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:110941200-110942000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr4:110941200-110942200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr4:110941200-110942400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:110941200-110942600	Enhancers	HUES64 Cell Line	embryonic stem cell

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