Variant report

Variant	rs17041245
Chromosome Location	chr4:110945256-110945257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10011112	0.89[MEX][hapmap]
rs11569100	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs17320827	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62325265	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62325266	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62325289	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6533487	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6850557	0.87[CEU][hapmap]
rs720419	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721412	0.94[EUR][1000 genomes]
rs7440841	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7685010	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698924	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9991904	0.91[CEU][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9999824	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17041245	GAR1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110941800-110945400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:110941800-110946200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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