Variant report

Variant	rs720419
Chromosome Location	chr4:110945966-110945967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11569100	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs17041245	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17320827	0.82[EUR][1000 genomes]
rs2074389	0.81[CHB][hapmap]
rs2282786	0.81[CHB][hapmap]
rs3822285	0.81[CHB][hapmap]
rs62325265	0.88[EUR][1000 genomes]
rs62325266	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62325289	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6533487	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6850557	0.83[CEU][hapmap]
rs721412	0.96[EUR][1000 genomes]
rs7440841	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7685010	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698924	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9991904	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs9999824	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110941800-110946200	Weak transcription	Fetal Lung	lung
2	chr4:110945400-110949000	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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