Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10011112	0.83[MEX][hapmap]
rs11568994	0.82[GIH][hapmap];0.94[MEX][hapmap]
rs11569100	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17041245	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17320827	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17320841	0.92[JPT][hapmap]
rs2237041	0.88[MEX][hapmap]
rs2250616	0.83[MEX][hapmap]
rs62325265	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62325266	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62325289	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533487	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6850557	0.87[CEU][hapmap]
rs720419	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs721412	0.95[EUR][1000 genomes]
rs7440841	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685010	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs881878	0.89[MEX][hapmap]
rs9991904	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9999824	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763384	chr4:110939666-110942596	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7698924	GAR1	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110941000-110942200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:110941000-110942400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:110941000-110942600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:110941200-110942200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:110941200-110942400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:110941200-110942600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:110941400-110942400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:110941600-110942400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:110941600-110942400	Enhancers	HSMMtube	muscle
10	chr4:110941600-110942800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:110941600-110943000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:110941800-110942400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:110941800-110943000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:110941800-110945400	Weak transcription	Brain Germinal Matrix	brain
15	chr4:110941800-110946200	Weak transcription	Fetal Lung	lung
16	chr4:110942000-110942200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
17	chr4:110942000-110942400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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