Variant report
| Variant | rs17316633 |
|---|---|
| Chromosome Location | chr4:110825634-110825635 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10011112 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs10014383 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10023272 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs1024600 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11568903 | 1.00[ASN][1000 genomes] |
| rs11568950 | 0.96[ASN][1000 genomes] |
| rs11568972 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11568994 | 0.90[JPT][hapmap] |
| rs17238095 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2024114 | 1.00[ASN][1000 genomes] |
| rs2237041 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs2250616 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2298977 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2347136 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes] |
| rs28437404 | 1.00[ASN][1000 genomes] |
| rs28535066 | 1.00[ASN][1000 genomes] |
| rs28540029 | 0.94[ASN][1000 genomes] |
| rs28564978 | 1.00[ASN][1000 genomes] |
| rs28672708 | 1.00[ASN][1000 genomes] |
| rs28734982 | 1.00[ASN][1000 genomes] |
| rs3796945 | 1.00[ASN][1000 genomes] |
| rs62327602 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6837717 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6850557 | 0.81[JPT][hapmap] |
| rs881878 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9307347 | 0.87[ASN][1000 genomes] |
| rs9991904 | 0.81[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530156 | chr4:110721397-110911297 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
Variant related diseases (count:1)
| Disease | PMID | Source |
|---|---|---|
| Hair morphology | 19896111 | GWAS catalog |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:110825000-110834000 | Weak transcription | Psoas Muscle | Psoas |
