Variant report

Variant	rs3764861
Chromosome Location	chr4:110885242-110885243
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110880113..110882132-chr4:110884747..110887034,2	MCF-7	breast:
2	chr4:110884465..110887295-chr4:110887593..110889209,2	K562	blood:
3	chr4:110884397..110887295-chr4:110887313..110889209,2	K562	blood:

Variant related genes	Relation type
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10002971	0.86[EUR][1000 genomes]
rs10011112	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs10014383	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs10017261	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10023272	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs10029105	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10029654	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10213531	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1024600	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs10470911	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10488881	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098056	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11568903	0.88[EUR][1000 genomes]
rs11568905	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11568950	0.97[EUR][1000 genomes]
rs11568972	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs11568994	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs17253063	0.87[EUR][1000 genomes]
rs2024114	0.96[EUR][1000 genomes]
rs2067004	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2190909	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2237041	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2237045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250616	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs2282785	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2298977	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2347136	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs28437404	0.93[EUR][1000 genomes]
rs28535066	0.94[EUR][1000 genomes]
rs28540029	0.95[EUR][1000 genomes]
rs28564978	0.95[EUR][1000 genomes]
rs28629923	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28672708	0.96[EUR][1000 genomes]
rs28734982	0.92[EUR][1000 genomes]
rs3775967	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3796945	0.95[EUR][1000 genomes]
rs3796946	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3822288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4279279	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4698755	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4698756	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4698800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4698801	0.91[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62327604	0.96[EUR][1000 genomes]
rs6533481	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6837717	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs6850557	0.80[CEU][hapmap]
rs7655579	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7668520	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7680062	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs881878	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs9307347	0.95[EUR][1000 genomes]
rs9992755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110869600-110888000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:110874400-110889000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
5	chr4:110883400-110886400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:110883600-110885800	Strong transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:110884200-110893600	Weak transcription	Fetal Heart	heart
8	chr4:110885000-110886000	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:110885200-110885800	Strong transcription	Left Ventricle	heart

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