Variant report

Variant	rs10018079
Chromosome Location	chr4:21700588-21700589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10011822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1542916	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2167246	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2167248	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418516	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28570500	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7434957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9997043	1.00[EUR][1000 genomes]
rs9997062	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21699400-21700800	Weak transcription	Fetal Lung	lung
2	chr4:21699600-21708400	Weak transcription	Brain Anterior Caudate	brain
3	chr4:21699800-21701200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:21699800-21701400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:21699800-21701400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:21700000-21701200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:21700200-21701400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:21700400-21701600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:21700400-21701800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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